latest
NOTES
Installation
System requrements
Backend
Quick Start with PyTorch
Install from pip
Install from source
How to Run
Introduction by Example
Data Handling of Graphs
Common Benchmark Datasets
Mini-batches
Creating Your Own Datasets
Creating “In Memory Datasets”
Creating “Larger” Datasets
Frequently Asked Questions
Exercises
Creating Message Passing Networks
The “MessagePassing” Base Class
Implementing the GCN Layer
Implementing the Edge Convolution
Exercises
Advanced Mini-Batching
Pairs of Graphs
Bipartite Graphs
Batching Along New Dimensions
API Reference
gammagl.data
gammagl.data.BaseGraph
gammagl.data.Graph
gammagl.data.BatchGraph
gammagl.data.HeteroGraph
gammagl.data.Dataset
gammagl.data.InMemoryDataset
gammagl.data.download_url
gammagl.data.InMemoryDataset
gammagl.data.extract_zip
gammagl.data.extract_tar
gammagl.datasets
gammagl.datasets.Amazon
gammagl.datasets.Coauthor
gammagl.datasets.TUDataset
gammagl.datasets.Planetoid
gammagl.datasets.Reddit
gammagl.datasets.IMDB
gammagl.datasets.Entities
gammagl.datasets.Flickr
gammagl.datasets.HGBDataset
gammagl.datasets.WikipediaNetwork
gammagl.datasets.WebKB
gammagl.datasets.ModelNet40
gammagl.datasets.DBLP
gammagl.datasets.CA_GrQc
gammagl.datasets.ZINC
gammagl.datasets.AMiner
gammagl.datasets.PolBlogs
gammagl.datasets.WikiCS
gammagl.layers
Convolutional Layers
Pooling Layers
Model
gammagl.loader
gammagl.loader.DataLoader
gammagl.loader.NeighborSampler
gammagl.loader.NodeNeighborLoader
gammagl.loader.LinkNeighborLoader
gammagl.loader.RandomWalk
gammagl.transforms
gammagl.transforms.BaseTransform
gammagl.transforms.AddMetaPaths
gammagl.transforms.Compose
gammagl.transforms.SIGN
gammagl.transforms.NormalizeFeatures
gammagl.transforms.DropEdge
gammagl.transforms.RandomLinkSplit
gammagl.transforms.mask_test_edges
gammagl.transforms.sparse_to_tuple
gammagl.utils
gammagl.utils.calc_A_norm_hat
gammagl.utils.calc_gcn_norm
gammagl.utils.segment_softmax
gammagl.utils.sort_edge_index
gammagl.utils.coalesce
gammagl.utils.to_undirected
gammagl.utils.is_undirected
gammagl.utils.degree
gammagl.utils.add_self_loops
gammagl.utils.remove_self_loops
gammagl.utils.mask_to_index
gammagl.utils.index_to_mask
gammagl.utils.set_device
gammagl.utils.to_dense_batch
gammagl.utils.k_hop_subgraph
gammagl.utils.negative_sampling
gammagl.utils.to_scipy_sparse_matrix
gammagl.utils.read_embeddings
gammagl.utils.homophily
GammaGL
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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U
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V
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W
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Y
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Z
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__cat_dim__() (BaseGraph method)
(Graph method)
(HeteroGraph method)
__inc__() (BaseGraph method)
(Graph method)
(HeteroGraph method)
A
add_self_loop() (Graph method)
add_self_loops (class in gammagl.utils)
AddMetaPaths (class in gammagl.transforms)
adj_full_id (Flickr attribute)
aggregate() (CompConv method)
(HypergraphConv method)
(MessagePassing method)
(PNAConv method)
AGNNConv (class in gammagl.layers.conv)
AGNNModel (class in gammagl.models)
Amazon (class in gammagl.datasets)
AMiner (class in gammagl.datasets)
apply() (BaseGraph method)
apply_() (BaseGraph method)
APPNPConv (class in gammagl.layers.conv)
APPNPModel (class in gammagl.models)
B
BaseGraph (class in gammagl.data)
BaseTransform (class in gammagl.transforms)
BatchGraph (class in gammagl.data)
C
CA_GrQc (class in gammagl.datasets)
CAGCNModel (class in gammagl.models)
calc_A_norm_hat (class in gammagl.utils)
calc_gcn_norm (class in gammagl.utils)
campute() (DeepWalkModel method)
(Node2vecModel method)
ChebConv (class in gammagl.layers.conv)
ChebNetModel (class in gammagl.models)
class_map_id (Flickr attribute)
cleaned_url (TUDataset attribute)
clone() (BaseGraph method)
coalesce (class in gammagl.utils)
coalesce() (BaseGraph method)
Coauthor (class in gammagl.datasets)
CoGSLModel (class in gammagl.models)
collate() (InMemoryDataset static method)
collect() (HeteroGraph method)
CompConv (class in gammagl.layers.conv)
CompGCN (class in gammagl.models)
Compose (class in gammagl.transforms)
copy() (InMemoryDataset method)
D
DataLoader (class in gammagl.loader)
Dataset (class in gammagl.data)
DBLP (class in gammagl.datasets)
DeepWalkModel (class in gammagl.models)
degree (class in gammagl.utils)
DGCNN (class in gammagl.models)
DGCNNModel (class in gammagl.models)
DGIModel (class in gammagl.models)
download() (Amazon method)
(AMiner method)
(CA_GrQc method)
(Coauthor method)
(Dataset method)
(DBLP method)
(Entities method)
(Flickr method)
(HGBDataset method)
(IMDB method)
(InMemoryDataset method)
(ModelNet40 method)
(Planetoid method)
(PolBlogs method)
(Reddit method)
(TUDataset method)
(WebKB method)
(WikiCS method)
(WikipediaNetwork method)
(ZINC method)
download_url (class in gammagl.data)
DropEdge (class in gammagl.transforms)
dump() (Graph method)
E
E_step() (GEstimationN method)
edge_items() (HeteroGraph method)
edge_stores (HeteroGraph property)
edge_types (HeteroGraph property)
EdgeConv (class in gammagl.layers.conv)
EM() (GEstimationN method)
encode() (GAEModel method)
(VGAEModel method)
Entities (class in gammagl.datasets)
extract_tar (class in gammagl.data)
extract_zip (class in gammagl.data)
F
FAGCNConv (class in gammagl.layers.conv)
FAGCNModel (class in gammagl.models)
feats_id (Flickr attribute)
file_names (CA_GrQc property)
FILMConv (class in gammagl.layers.conv)
FILMModel (class in gammagl.models)
Flickr (class in gammagl.datasets)
forward() (AGNNConv method)
(AGNNModel method)
(APPNPConv method)
(APPNPModel method)
(CAGCNModel method)
(ChebConv method)
(ChebNetModel method)
(CompConv method)
(CompGCN method)
(DeepWalkModel method)
(DGCNN method)
(DGCNNModel method)
(DGIModel method)
(EdgeConv method)
(FAGCNConv method)
(FAGCNModel method)
(FILMConv method)
(FILMModel method)
(GAEModel method)
(GATConv method)
(GATModel method)
(GATV2Conv method)
(GATV2Model method)
(GCNConv method)
(GCNIIConv method)
(GCNIIModel method)
(GCNModel method)
(GINConv method)
(GINModel method)
(GMMConv method)
(GMMModel method)
(GPRConv method)
(GPRGNNModel method)
(GraceModel method)
(GraphSAGE_Full_Model method)
(GraphSAGE_Sample_Model method)
(HAN method)
(HANConv method)
(HardGATConv method)
(HardGATModel method)
(HCHA method)
(HeteroConv method)
(HGTConv method)
(HGTModel method)
(HPN method)
(HPNConv method)
(HypergraphConv method)
(ieHGCNConv method)
(JKNet method)
(JumpingKnowledge method)
(MAGCLConv method)
(MGNNI_m_iter method)
(MixHopConv method)
(MixHopModel method)
(Node2vecModel method)
(PNAConv method)
(PNAModel method)
(RGCN method)
(RGCNConv method)
(SAGEConv method)
(SGCModel method)
(SGConv method)
(SimpleHGNConv method)
(SimpleHGNModel method)
(Specformer method)
(VGAEModel method)
from_data_list() (BatchGraph class method)
from_dict() (Graph class method)
G
GAEModel (class in gammagl.models)
GATConv (class in gammagl.layers.conv)
GATModel (class in gammagl.models)
GATV2Conv (class in gammagl.layers.conv)
GATV2Model (class in gammagl.models)
GCNConv (class in gammagl.layers.conv)
GCNIIConv (class in gammagl.layers.conv)
GCNIIModel (class in gammagl.models)
GCNModel (class in gammagl.models)
GEstimationN (class in gammagl.models)
get() (Dataset method)
(InMemoryDataset method)
get_cls_loss() (CoGSLModel method)
get_edge_store() (HeteroGraph method)
get_embeding() (GraceModel method)
get_example() (BatchGraph method)
get_fusion() (CoGSLModel method)
get_loss() (GraceModel method)
get_mi_loss() (CoGSLModel method)
get_node_store() (HeteroGraph method)
get_v_cls_loss() (CoGSLModel method)
get_view() (CoGSLModel method)
GINConv (class in gammagl.layers.conv)
GINModel (class in gammagl.models)
global_max_pool (class in gammagl.layers.pool)
global_mean_pool (class in gammagl.layers.pool)
global_min_pool (class in gammagl.layers.pool)
global_sort_pool (class in gammagl.layers.pool)
global_sum_pool (class in gammagl.layers.pool)
GMMConv (class in gammagl.layers.conv)
GMMModel (class in gammagl.models)
GPRConv (class in gammagl.layers.conv)
GPRGNNModel (class in gammagl.models)
GraceModel (class in gammagl.models)
Graph (class in gammagl.data)
GraphSAGE_Full_Model (class in gammagl.models)
GraphSAGE_Sample_Model (class in gammagl.models)
H
HAN (class in gammagl.models)
HANConv (class in gammagl.layers.conv)
HardGATConv (class in gammagl.layers.conv)
HardGATModel (class in gammagl.models)
has_isolated_nodes() (BaseGraph method)
has_self_loops() (BaseGraph method)
HCHA (class in gammagl.models)
HeteroConv (class in gammagl.layers.conv)
HeteroGraph (class in gammagl.data)
HGBDataset (class in gammagl.datasets)
HGTConv (class in gammagl.layers.conv)
HGTModel (class in gammagl.models)
homophily (class in gammagl.utils)
HPN (class in gammagl.models)
HPNConv (class in gammagl.layers.conv)
HypergraphConv (class in gammagl.layers.conv)
I
ieHGCNConv (class in gammagl.layers.conv)
IMDB (class in gammagl.datasets)
in_degree (Graph property)
index_select() (BatchGraph method)
(Dataset method)
index_to_mask (class in gammagl.utils)
inference() (GraphSAGE_Sample_Model method)
InMemoryDataset (class in gammagl.data)
is_coalesced() (BaseGraph method)
is_directed() (BaseGraph method)
is_edge_attr() (Graph method)
is_node_attr() (Graph method)
is_undirected (class in gammagl.utils)
is_undirected() (BaseGraph method)
(HeteroGraph method)
J
JKNet (class in gammagl.models)
JumpingKnowledge (class in gammagl.layers.conv)
K
k_hop_subgraph (class in gammagl.utils)
keys (BaseGraph property)
L
len() (Dataset method)
(InMemoryDataset method)
LinkNeighborLoader (class in gammagl.loader)
load() (Graph class method)
load_data() (Dataset method)
loss() (DeepWalkModel method)
(Node2vecModel method)
M
M_step() (GEstimationN method)
MAGCLConv (class in gammagl.layers.conv)
mask_test_edges (class in gammagl.transforms)
mask_to_index (class in gammagl.utils)
message() (AGNNConv method)
(CompConv method)
(EdgeConv method)
(FAGCNConv method)
(FILMConv method)
(GATConv method)
(GATV2Conv method)
(GINConv method)
(HardGATConv method)
(HGTConv method)
(HypergraphConv method)
(MessagePassing method)
(PNAConv method)
(SimpleHGNConv method)
message_aggregate() (MessagePassing method)
MessagePassing (class in gammagl.layers.conv)
metadata() (HeteroGraph method)
MGNNI_m_iter (class in gammagl.layers.conv)
MixHopConv (class in gammagl.layers.conv)
MixHopModel (class in gammagl.models)
ModelNet40 (class in gammagl.datasets)
N
names (HGBDataset attribute)
neg_sample() (DeepWalkModel method)
(Node2vecModel method)
negative_sampling (class in gammagl.utils)
NeighborSampler (class in gammagl.loader)
Node2vecModel (class in gammagl.models)
node_items() (HeteroGraph method)
node_stores (HeteroGraph property)
node_types (HeteroGraph property)
NodeNeighborLoader (class in gammagl.loader)
NormalizeFeatures (class in gammagl.transforms)
num_classes (Entities property)
(InMemoryDataset property)
(ModelNet40 property)
num_edge_attributes (TUDataset property)
num_edge_features (Dataset property)
(Graph property)
(HeteroGraph property)
num_edge_labels (TUDataset property)
num_edges (BaseGraph property)
num_features (Dataset property)
(Graph property)
(HeteroGraph property)
num_graphs (BatchGraph property)
num_node_attributes (TUDataset property)
num_node_features (Dataset property)
(Graph property)
(HeteroGraph property)
num_node_labels (TUDataset property)
num_nodes (BaseGraph property)
(HeteroGraph property)
num_relations (Entities property)
numpy() (Graph method)
(HeteroGraph method)
O
out_degree (Graph property)
P
Planetoid (class in gammagl.datasets)
PNAConv (class in gammagl.layers.conv)
PNAModel (class in gammagl.models)
PolBlogs (class in gammagl.datasets)
pos_sample() (DeepWalkModel method)
(Node2vecModel method)
process() (Amazon method)
(AMiner method)
(Coauthor method)
(Dataset method)
(DBLP method)
(Entities method)
(Flickr method)
(HGBDataset method)
(IMDB method)
(InMemoryDataset method)
(ModelNet40 method)
(Planetoid method)
(PolBlogs method)
(Reddit method)
(TUDataset method)
(WebKB method)
(WikiCS method)
(WikipediaNetwork method)
(ZINC method)
processed_dir (Amazon property)
(Coauthor property)
(Entities property)
(HGBDataset property)
(Planetoid property)
(TUDataset property)
(WebKB property)
(WikiCS property)
(WikipediaNetwork property)
(ZINC property)
processed_file_names (Amazon property)
(AMiner property)
(Coauthor property)
(Dataset property)
(DBLP property)
(Entities property)
(Flickr property)
(HGBDataset property)
(IMDB property)
(InMemoryDataset property)
(ModelNet40 property)
(Planetoid property)
(PolBlogs property)
(Reddit property)
(TUDataset property)
(WebKB property)
(WikiCS property)
(WikipediaNetwork property)
(ZINC property)
processed_paths (Dataset property)
processed_url (WikipediaNetwork attribute)
propagate() (CompConv method)
(HGTConv method)
(MessagePassing method)
(SimpleHGNConv method)
R
RandomLinkSplit (class in gammagl.transforms)
RandomWalk (class in gammagl.loader)
raw_dir (Amazon property)
(Coauthor property)
(Entities property)
(HGBDataset property)
(Planetoid property)
(TUDataset property)
(WebKB property)
(WikiCS property)
(WikipediaNetwork property)
raw_file_names (Amazon property)
(AMiner property)
(Coauthor property)
(Dataset property)
(DBLP property)
(Entities property)
(Flickr property)
(HGBDataset property)
(IMDB property)
(InMemoryDataset property)
(ModelNet40 property)
(Planetoid property)
(PolBlogs property)
(Reddit property)
(TUDataset property)
(WebKB property)
(WikiCS property)
(WikipediaNetwork property)
(ZINC property)
raw_paths (Dataset property)
raw_url (WikipediaNetwork attribute)
read_edges() (CA_GrQc method)
read_edges_from_file() (CA_GrQc method)
read_embeddings (class in gammagl.utils)
Reddit (class in gammagl.datasets)
remove_self_loops (class in gammagl.utils)
rename() (HeteroGraph method)
reparameterize() (VGAEModel method)
reset_obs() (GEstimationN method)
reset_parameters() (GPRConv method)
(GPRGNNModel method)
(HeteroConv method)
(HypergraphConv method)
(MGNNI_m_iter method)
revise_pred() (GEstimationN method)
RGCN (class in gammagl.models)
RGCNConv (class in gammagl.layers.conv)
role_id (Flickr attribute)
S
SAGEConv (class in gammagl.layers.conv)
sample() (NeighborSampler method)
save_data() (Dataset method)
segment_softmax (class in gammagl.utils)
select_topk() (HardGATConv method)
set_device (class in gammagl.utils)
SGCModel (class in gammagl.models)
SGConv (class in gammagl.layers.conv)
shuffle() (Dataset method)
SIGN (class in gammagl.transforms)
sim() (GraceModel method)
SimpleHGNConv (class in gammagl.layers.conv)
SimpleHGNModel (class in gammagl.models)
size() (BaseGraph method)
sort_edge_index (class in gammagl.utils)
sorted_edges() (Graph method)
sparse_to_tuple (class in gammagl.transforms)
Specformer (class in gammagl.models)
special_args (MessagePassing attribute)
split_url (ZINC attribute)
stores (HeteroGraph property)
str_list_to_int() (CA_GrQc method)
T
tensor() (Graph method)
to_data_list() (BatchGraph method)
to_dense_batch (class in gammagl.utils)
to_dict() (BaseGraph method)
(Graph method)
(HeteroGraph method)
to_heterogeneous() (Graph method)
to_homogeneous() (HeteroGraph method)
to_namedtuple() (BaseGraph method)
(Graph method)
(HeteroGraph method)
to_scipy_sparse_matrix (class in gammagl.utils)
to_undirected (class in gammagl.utils)
TUDataset (class in gammagl.datasets)
U
update() (MessagePassing method)
update_obs() (GEstimationN method)
url (Amazon attribute)
(AMiner attribute)
(CA_GrQc attribute)
(Coauthor attribute)
(DBLP attribute)
(Entities attribute)
(Flickr attribute)
(IMDB attribute)
(ModelNet40 attribute)
(Planetoid attribute)
(PolBlogs attribute)
(Reddit attribute)
(TUDataset attribute)
(WebKB attribute)
(WikiCS attribute)
(ZINC attribute)
urls (HGBDataset attribute)
V
VGAEModel (class in gammagl.models)
W
WebKB (class in gammagl.datasets)
WikiCS (class in gammagl.datasets)
WikipediaNetwork (class in gammagl.datasets)
Y
y_url (AMiner attribute)
Z
ZINC (class in gammagl.datasets)
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